Publications

2017

Scientific paper

  • The CCAAT-Binding Complex Controls Respiratory Gene Expression and Iron Homeostasis in Candida Glabrata.
    Thiébaut A, Delaveau T, Benchouaia M, Boeri J, Garcia M, Lelandais G, Devaux F. Sci Rep. 2017 Jun 14;7(1):3531. doi: 10.1038/s41598-017-03750-5. PMID: 28615656 [Pubmed]
  • Acclimation of a low iron adapted Ostreococcus strain to iron limitation through cell biomass lowering. H. Botebol, G. Lelandais, C. Six, E. Lesuisse, A. Meng, L. Bittner, S. Lecrom, R. Sutak, J.C. Lozano, P. Schatt, V. Vergé, S. Blain, F.Y. Bouget. Sci Rep. 2017 Mar 23;7(1):327. doi: 10.1038/s41598-017-00216-6 [Pubmed]

Book chapter

  • Les enjeux du séquençage haut débit pour la biologie contemporaine. G. Lelandais et J.M. Camadro. Book chapter “Les Big Data à découvert” [CNRS Editions]

2016

Scientific papers

  • Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae. T. Delaveau, D. Davoine, A. Jolly, A. Vallot, J.O Rouvière, A. Gerber, S. Brochet, M. Plessis, R. Roquigny, J. Merhej, T. Leger, C. Garcia, G. Lelandais, E. Laine, B. Palancade, F. Devaux, M. Garcia.
    Nucleic Acids Res. 2016 Aug 31. pii: gkw732. [Pubmed]
  • A network of paralogous stress response transcription factors in the human pathogen Candida glabrata. J. Merhej, A. Thiebaut, C. Blugeon, J. Pouch, A. Ali Chaouche Mel, JM. Camadro, S. Le Crom, G. Lelandais*, F. Devaux*. Front Microbiol. 2016 May 9;7:645. doi: 10.3389/fmicb.2016.00645. eCollection 2016 [Pubmed]
  • Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton. G. Lelandais*; I. Scheiber*; J. Paz-Yepes; J.C Lozano; H. Botebol; J. Pilátová; V. Žárský; T. Léger; P.L Blaiseau; C. Bowler; F.Y Bouget; J.M Camadro; R. Sutak; E. Lesuisse. BMC Genomics. 2016 May 3;17(1):319. doi: 10.1186/s12864-016-2666-6. [Pubmed]

2015

Scientific papers

  • Fermentation and Alternative Respiration Compensate for NADH Dehydrogenase Deficiency in a Prokaryotic Model of DJ-1 Associated Parkinsonism. N. Messaoudi, V. Gautier, J. Dairou, M. Mihoub, G. Lelandais, P. Bouloc, A. Landoulsi, G. Richarme. Microbiology. 2015 Sep 15. doi: 10.1099/mic.0.000181 [Pubmed]
  • Yap7 is a Transcriptional Repressor of Nitric Oxide Oxidase in Yeasts, which arose from Neofunctionalization after Whole Genome Duplication. J. Merhej, T. Delaveau, J. Guitard, B. Palancade, C. Hennequin, M. Garcia, G. Lelandais, F. Devaux. Mol Microbiol. 2015 Mar 2. doi: 10.1111/mmi.12983. [Epub ahead of print] [Pubmed]
  • The metacaspase Mca1p has a dual role in farnesol-induced apoptosis in Candida albicans. T. Léger, C. Garcia, M. Ounissi, G. Lelandais, JM. Camadro. Mol Cell Proteomics, 2015 Jan;14(1):93-108. doi: 10.1074/mcp.M114.041210. Epub 2014 Oct 27. [Pubmed]

Book chapter

  • ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses. G. Lelandais, C. Blugeon, J. Merhej. Methods Mol Biol. 2016;1361:185-202. doi: 10.1007/978-1-4939-3079-1_11. [Pubmed]

2014

Scientific paper

  • bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes. J. Merhej, A. Frigo, S. Le Crom, JM. Camadro, F. Devaux and G. Lelandais. Yeast, 2014 Oct;31(10):375-91. doi: 10.1002/yea.3031. Epub 2014 Jul 28. [Pubmed]

2013

Scientific paper

  • Global stress response in prokaryotic model of DJ-1 associated Parkinsonism. N. Messaoudi, V. Gautier, F. Kthiri, G. Lelandais, M. Mihoub, D. Joseleau-Petit, T. Caldas, C. Bohn, L. Tolosa, G. Rao, K. Tao, A. Landoulsi, P. Bouloc, G. Richarme. J Bacteriol. 2013 Jan 4. [Pubmed]

2012

Scientific paper

  • RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans. S. Dhamgaye, M. Bernard, G. Lelandais, O. Sismeiro, S. Lemoine, J.Y. Coppée, S. Le Crom, R. Prasad, F. Devaux. BMC Genomics. 2012 Aug 16;13(1):396. [Pubmed]

Book chapter

  • Role of the Yap family in the transcriptional response to oxidative stress in yeasts. C. Goudot, F. Devaux and G. Lelandais. Oxidative Stress – Molecular Mechanisms and Biological Effects, ISBN: 978-953-51-0554-1. [Full Text]

2011

Scientific papers

  • Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica. N. Morin, J. Cescut, A. Beopoulos, G. Lelandais, V. Le Berre, J.L. Uribelarrea, C. Molina-Jouve, J.M. Nicaud. PLoS One. 2011;6(11):e27966. Epub 2011 Nov 22. [Pubmed]
  • The evolution of gene expression regulatory networks in yeasts. G. Lelandais, C. Goudot, F. Devaux. C R Biol. 2011 Aug-Sep;334(8-9):655-61. Epub 2011 Jul 2. [Pubmed]
  • The Reconstruction of Condition-Specific Transcriptional Modules Provides New Insights in the Evolution of Yeast AP-1 Proteins. C. Goudot, C. Etchebest, F. Devaux, G. Lelandais. PLoS One. 2011;6(6):e20924. Epub 2011 Jun 9. [Pubmed]
  • MitoGenesisDB: an expression data mining tool to explore spatio-temporal dynamics of mitochondrial biogenesis. J.C. Gelly, M. Orgeur, C. Jacq, G. Lelandais. Nucleic Acids Res. 2011 Jan;39(Database issue):D1079-84. Epub 2010 Sep 9. [Pubmed]

Book chapter

  • Recovering genetic network from continuous data with Dynamic Bayesian Networks. G. Lelandais and S. Lèbre. Handbook of Statistical Systems Biology (eds M. P. H. Stumpf, D. J. Balding and M. Girolami), John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/9781119970606.ch12. [External Link]

2010

Scientific papers

  • Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. D. Cohen, M.B. Bogeat-Triboulot, E. Tisserant, S. Balzergue, M.L. Martin-Magniette, G. Lelandais, N. Ningre, J.P. Renou, J.P. Tamby, D. Le Thiec, I. Hummel. BMC Genomics. 2010 Nov 12;11:630. [Pubmed]
  • Posttranscriptional control of mitochondrial biogenesis: Spatio-temporal regulation of the protein import process. F. Devaux, G. Lelandais, M. Garcia, S. Goussard, C. Jacq. FEBS Lett. 2010 Oct 22;584(20):4273-9. Epub 2010 Sep 26. Review. [Pubmed]
  • Statistical inference of the time-varying structure of gene regulation networks. S. Lèbre, J. Becq, F. Devaux, MP Stumpf, G. Lelandais. BMC Syst Biol. 2010 Sep 22;4(1):130. [Pubmed]
  • Comparative Functional Genomics of Stress Responses in Yeasts. G. Lelandais, F. Devaux. OMICS 2010 Aug 9. [Pubmed]
  • Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments. M. Celton, A. Malpertuy, G. Lelandais, A. G de Brevern. BMC Genomics. 2010 Jan 7;11:15. [Pubmed]

2009

Scientific paper

  • Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules. G. Lelandais, Y. Saint-Georges, C. Geneix, L. Al-Shikhley, G. Dujardin, C. Jacq. PLoS Comput Biol. 2009 Jun;5(6):e1000409. Epub 2009 Jun 12. [Pubmed]

2008

Scientific papers

  • Genome Adaptation to Chemical Stress: Clues from Comparative Transcriptomics in Saccharomyces cerevisiae and Candida glabrata. G. Lelandais, V. Tanty, C. Geneix, C. Etchebest, C. Jacq and F. Devaux. Genome Biol. 2008;9(11):R164. Epub 2008 Nov 24. [Pubmed]
  • Structure and Properties of Transcriptional Networks Driving Selenite Stress Response in Yeasts. H. Salin, V. Fardeau, E. Piccini, G. Lelandais, V. Tanty, S. Lemoine, C. Jacq and F. Devaux. BMC Genomics. 2008 Jul 15;9:333. [Pubmed]
  • Bounded List Injective Homomorphism for Comparative Analysis of Protein-Protein Interaction Graphs. I. Fagnot, G. Lelandais and S. Vialette. Journal of Discrete Algorithms. Volume 6, Issue 2, June 2008, Pages 178-191.
  • Responses of pathogenic and nonpathogenic yeast species to steroids reveal the functioning and evolution of multidrug resistance transcriptional networks. D. Banerjee, G. Lelandais, S. Shukla, G. Mukhopadhyay, C. Jacq, F. Devaux and R. Prasad. Eukaryot Cell. 2008 Jan;7(1):68-77. Epub 2007 Nov 9. [Pubmed]

Book chapter

  • Modeling a Regulatory Network Using Temporal Gene Expression Data: Why and How? S. Lèbre and G. Lelandais. In Automation in Genomics and Proteomics: An Engineering Case-Based Approach: MIT and Harvard interdisciplinary special studies courses (R. Benson, G. Alterovitz and M. Ramoni, ed.). ISBN: 978-0-470-72723-2.

2007

Scientific papers

  • Clustering Gene Expression Data Using Graph Separators. B. Kaba, N. Pinet, G. Lelandais, A. Sigayret, A. Berry. In Silico Biol. In Silico Biol. 2007;7(4-5):433-52. [Pubmed]
  • The Central Role of PDR1 in the Foundation of Yeast Drug Resistance. V. Fardeau, G. Lelandais, A. Oldfield, H. Salin, S. Lemoine, M. Garcia, V. Tanty, S. Le Crom, C. Jacq, and F. Devaux. J Biol Chem. 2007 Feb 16;282(7):5063-74. Epub 2006 Dec 11. [Pubmed]

2006

Scientific paper

  • Comparing Gene Expression Networks in a Multi-Dimensional Space to Extract Similarities and Differences between Organisms. G. Lelandais, P. Vincens, A. Badel-Chagnon, S. Vialette, C. Jacq and S. Hazout. Bioinformatics 2006 Jun 1;22(11):1359-66. [Pubmed]

Book chapter

  • Cross-Species Comparison Using Expression Data. G. Lelandais and S. Le Crom. Introduction to Systems Biology (Book, Editor: Sangdun Choi) Humana Press Inc. ISBN: 978-1-58829-706-8.

2005

Scientific paper

  • The Early Expression of Yeast Genes Affected by Chemical Stress. A. Lucau-Danila*, G. Lelandais*, Z. Kozovska, V. Tanty, T. Delaveau, F. Devaux and C. Jacq, (*equal contributors). Mol Cell Biol. 2005 Mar;25(5):1860-8. [Pubmed]

2004

Scientific papers

  • MiCoViTo : a Tool for Gene-Centric Comparison and Visualization of Yeast Transcriptome States. G. Lelandais, P. Marc, P. Vincens, C. Jacq and S. Vialette. BMC Bioinformatics. 2004 Mar 03;5(1):20. [Pubmed]
  • yMGV: a Cross-Species Expression Data Mining Tool. G. Lelandais, S. Le Crom, F. Devaux, S. Vialette, G.M. Church, C. Jacq and P. Marc. Nucleic Acids Res. 2004 Jan 1;32 Database issue:D323-5. [Pubmed]

2003

Scientific paper

  • Competitive Promoter-Occupancy by two Yeast Paralogous Transcription Factors Controlling the Multi-Drug Resistance Phenomenon. A. Lucau-Danila, T. Delaveau, G. Lelandais, F. Devaux and C. Jacq. J Biol Chem. 2003 Dec 26;278(52):52641-50. Epub 2003 Sep 25. [Pubmed]
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